Numerical simulations in
Using the script¶
When installed using pip, a
tunasimu executable is provided to run
numerical simulations and save results on local directories. These
files can be used to try
tunacell’s analysis tools.
Such a command comes with various parameters, that will printed upon call:
$ tunasimu -h
There is a list of (optional) parameters.
What are these simulations about?¶
ou is the value of the Ornstein-Uhlenbeck random process simulated
in each cell,
int_ou is the integrated value of the random process reset
to zero at each cell birth,
exp_int_ou is the exponential of the later
value. One can think of the Ornstein-Uhlenbeck as instantaneous growth rate of
the cell, and thus
exp_int_ou can be associated to cell length.